Ccp4 manual pdbset

LSQKAB (CCP4: Supported Program) NAME lsqkab - Work out and apply various transformations to coordinate files. SYNOPSIS. Secondary purpose - much better done in PDBSET. The rotating coordinate set contained in file XYZINM can be transformed by a given rotation matrix and translation. Electron density maps Loading a map and model. Load the coordinate file www.doorway.ru with the picture wizard style set to Bonds: all www.doorway.ru load the CCP4 MTZ (structure factor) file toxd_www.doorway.ru the new window you can select the structure factor and phase data from the file - accept the defaults by clicking www.doorway.ru map will be calculated and displayed. The new CCP4 Heavy Atom format is included, too. Take care in using the correct orthogonalisation code. See program documentation: COORDCONV. Edit PDB File. The program PDBSET is used for various manipulations on coordinate files. Apart from PDB format, the input file may be XPLOR format, in which case certain operations are performed automatically.

Secondary purpose - much better done in PDBSET The rotating coordinate set contained in file XYZINM can be transformed by a given rotation matrix and translation (see ROTATE and TRANSLATE keywords), and then output in a new orientation to the file XYZOUT. The CCP4 logo will appear at the bottom left of the display window. The image is represented on the display table by a line containing a slider that controls the image scale and a button to open a window to control its position. The image can also be moved by clicking on the icon and selecting Move object. Moving the image is then the same as. PDBCUR (CCP4: Supported Program) NAME pdbcur - a curation tool providing various analyses and manipulations of PDB files SYNOPSIS pdbcur xyzin foo_www.doorway.ru xyzout foo_www.doorway.ru [Key-worded input file] DESCRIPTION pdbcur provides various functions for analysing and manipulating the contents of PDB files. The program is written using the new MMDB library for coordinate data, and thus works with a hierarchical view of the atomic model.

Denzo has a nice printed manual termed HKL which describes a number of programs used in pdbset xyzin www.doorway.ru xyzout www.doorway.ru << eof pdbset XYZIN foo_www.doorway.ru XYZOUT foo_www.doorway.ru [Keyworded input]. Note that PDBSET should work with mmCIF files as well as PDB files. MAIDaid will also read CCP4 maps, convert them to X-PLOR format and normalise Download MAID code, manual and makefile (tar and zipped) by clicking on.